Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CDQ19261.1Tetratricopeptide repeat protein. (338 aa)    
Predicted Functional Partners:
CDQ21514.1
Glutaredoxin-like protein, YruB-family.
 
 0.768
groL
Stress protein H5; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 
 0.766
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.757
CDQ21103.1
Putative ABC-type exoprotein transport system, permease component.
  
     0.757
CDQ18110.1
Hypothetical protein.
  
     0.739
trxB_2
Thioredoxin reductase.
  
  0.738
CDQ21107.1
Gas vesicle protein.
  
    0.729
CDQ18201.1
Hypothetical protein.
  
     0.710
rsfA_2
Prespore-specific transcriptional regulator RsfA.
  
     0.705
gerD
Spore germination protein GerD precursor.
  
     0.702
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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