STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fadM_3Proline dehydrogenase 1. (305 aa)    
Predicted Functional Partners:
rocA1
1-pyrroline-5-carboxylate dehydrogenase 1; Belongs to the aldehyde dehydrogenase family. RocA subfamily.
 
 0.971
rocA
1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. RocA subfamily.
 
 0.970
gltB_1
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.916
proC_2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.901
proC_3
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.901
aldHT_1
Aldehyde dehydrogenase, thermostable.
 
  0.900
fadM_1
Proline dehydrogenase 1.
     
  0.885
CDQ20702.1
2OG-Fe(II) oxygenase superfamily protein.
     
  0.885
iolA_1
Methylmalonate semialdehyde dehydrogenase [acylating].
 
 
  0.884
aldHT_2
Aldehyde dehydrogenase, thermostable.
 
 
  0.877
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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