STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19355.1Putative ABC transporter-binding protein precursor. (467 aa)    
Predicted Functional Partners:
ycjP_2
Inner membrane ABC transporter permease protein YcjP.
 
 0.989
sugA
Trehalose transport system permease protein SugA.
 
 0.980
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.979
araP_1
L-arabinose transport system permease protein AraP.
 
 0.958
lacF
Lactose transport system permease protein LacF.
 
 0.958
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.956
araQ_2
L-arabinose transport system permease protein AraQ.
 
 0.955
araP_2
L-arabinose transport system permease protein AraP.
 
 0.954
ycjP_1
Inner membrane ABC transporter permease protein YcjP.
 
 0.953
araQ_3
L-arabinose transport system permease protein AraQ.
 
 0.953
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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