Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CDQ19363.1CRISPR-associated protein Cas9/Csn1, subtype II/NMEMI. (326 aa)    
Predicted Functional Partners:
CDQ19362.1
Hypothetical protein.
       0.748
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.748
yitJ_2
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
     
  0.747
CDQ20321.1
Type IV secretion system protein VirD4.
   
 
 0.716
CDQ17951.1
Phage terminase-like protein, large subunit.
  
  
 0.591
CDQ20589.1
Hypothetical protein.
  
     0.546
CDQ18968.1
1,4-dihydroxy-2-naphthoate octaprenyltransferase.
  
     0.541
mazG
Nucleoside triphosphate pyrophosphohydrolase.
     
 0.534
CDQ18558.1
Sodium/glutamate symporter.
  
     0.521
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
     
  0.516
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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