STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CDQ19403.1Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (240 aa)    
Predicted Functional Partners:
lgrD
Linear gramicidin synthase subunit D.
 
  
  0.855
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
  0.799
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
  0.715
lcfB_5
Long-chain-fatty-acid--CoA ligase.
 
  
  0.504
yecD_1
Isochorismatase family protein YecD.
   
 
  0.496
yecD_2
Isochorismatase family protein YecD.
   
 
  0.496
tsaC1_2
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2.
  
 
 
0.475
CDQ20729.1
Glucose 1-dehydrogenase.
 
 
 
0.474
fabG_5
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 
0.466
polS
Sorbitol dehydrogenase.
  
 
 
0.462
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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