STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gerBC_1Spore germination protein B3 precursor. (383 aa)    
Predicted Functional Partners:
yndE_1
Spore germination protein YndE.
 
  
 0.954
gerAA_1
Spore germination protein A1.
 
  
 0.947
gerBA_5
Spore germination protein B1.
 
  
 0.791
gerBA_3
Spore germination protein B1.
 
  
 0.790
yndE_2
Spore germination protein YndE.
 
  
 0.782
yndE_3
Spore germination protein YndE.
 
  
 0.781
gerBA_4
Spore germination protein B1.
 
  
 0.780
gerAA_5
Spore germination protein A1.
 
  
 0.771
gerBA_2
Spore germination protein B1.
 
  
 0.711
ylbJ
Sporulation integral membrane protein YlbJ.
  
     0.689
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.