Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yndE_1Spore germination protein YndE. (365 aa)    
Predicted Functional Partners:
gerBC_1
Spore germination protein B3 precursor.
 
  
 0.954
gerAA_1
Spore germination protein A1.
 
    0.939
gerBC_2
Spore germination protein B3 precursor.
 
  
 0.801
gerBC_3
Spore germination protein B3 precursor.
 
  
 0.796
gerBA_5
Spore germination protein B1.
 
  
 0.759
gerBA_3
Spore germination protein B1.
 
  
 0.755
gerAA_5
Spore germination protein A1.
 
  
 0.737
gerBA_4
Spore germination protein B1.
 
  
 0.722
gerAA_4
Spore germination protein A1.
 
  
 0.665
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.663
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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