STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gerAA_1Spore germination protein A1. (460 aa)    
Predicted Functional Partners:
gerBC_1
Spore germination protein B3 precursor.
 
  
 0.947
yndE_1
Spore germination protein YndE.
 
    0.939
CDQ19437.1
Stage V sporulation protein AC.
  
    0.781
spoVAD
Stage V sporulation protein AD.
  
    0.781
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.779
gerBC_2
Spore germination protein B3 precursor.
 
  
 0.779
spoIVB
SpoIVB peptidase precursor.
  
     0.775
CDQ18819.1
Stage II sporulation protein R.
 
     0.775
CDQ19439.1
Stage V sporulation protein AE.
  
    0.775
spoVT
Stage V sporulation protein T.
  
     0.775
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.