Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CDQ19407.1RDD family protein. (180 aa)    
Predicted Functional Partners:
sppA
Putative signal peptide peptidase SppA.
 
  
 0.987
CDQ21190.1
Bacterial membrane flanked domain protein.
 
    0.651
nhaK_1
Sodium, potassium, lithium and rubidium/H(+) antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Can also transport lithium.
      
 0.618
aspS
Aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
     
 0.586
hslR
Heat shock protein 15.
   
    0.543
yfhQ
Putative A/G-specific adenine glycosylase YfhQ; Adenine glycosylase active on G-A mispairs.
      
 0.484
CDQ21191.1
Bacterial membrane flanked domain protein.
 
    0.441
yclM
Aspartokinase 3; Belongs to the aspartokinase family.
  
     0.420
CDQ18334.1
Hypothetical protein; Belongs to the UPF0354 family.
  
     0.407
bceB
Bacitracin export permease protein BceB.
  
     0.404
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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