STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccsA_2Cytochrome c biogenesis protein CcsA. (396 aa)    
Predicted Functional Partners:
ccsB
Cytochrome c biogenesis protein CcsB.
 
  
 0.994
resA_1
Thiol-disulfide oxidoreductase ResA.
 
  
 0.959
srrB
Sensor protein SrrB.
 
  
 0.821
qcrB
Menaquinol-cytochrome c reductase cytochrome b subunit.
  
  
 0.791
ccsA_1
Cytochrome c biogenesis protein CcsA.
  
     0.768
cccA_1
Cytochrome c551.
 
   
 0.752
petB
Cytochrome b.
  
  
 0.752
CDQ19491.1
Hypothetical protein.
  
     0.738
CDQ19631.1
Thiol:disulfide interchange protein precursor.
 
  
 0.738
CDQ20361.1
Hypothetical protein.
  
     0.735
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.