STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjA_2Putative NAD(P)H nitroreductase YdjA. (184 aa)    
Predicted Functional Partners:
birA
Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.688
CDQ20707.1
ABC-2 type transporter, NodJ family.
  
  
 0.641
CDQ21254.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
    0.586
drrB
Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.
 
    0.581
ctaC
Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
  0.556
pyrK
Dihydroorotate oxidase B, electron transfer subunit.
     
 0.552
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
    
 0.543
azr
FMN-dependent NADPH-azoreductase.
     
 0.537
CDQ18204.1
Na(+)-translocating NADH-quinone reductase subunit F.
     
 0.532
CDQ20291.1
Inner membrane transport permease.
  
    0.527
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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