Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yqiKInner membrane protein YqiK. (492 aa)    
Predicted Functional Partners:
CDQ18042.1
SigmaW regulon antibacterial.
   
  
 0.833
CDQ21138.1
FR47-like protein.
  
  
 0.729
CDQ21257.1
Ribosomal-protein-alanine N-acetyltransferase.
  
  
 0.729
CDQ18041.1
Hypothetical protein.
   
    0.599
ydjF
Phage shock protein A homolog.
  
  
 0.594
CDQ18689.1
Phage shock protein A.
  
  
 0.594
CDQ18043.1
Signal peptide peptidase SppA, 36K type.
   
    0.585
CDQ18016.1
Hypothetical protein; NfeD-like C-terminal, partner-binding.
   
    0.525
acs
Acetyl-coenzyme A synthetase.
       0.497
CDQ20534.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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