STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lcfB_4Long-chain-fatty-acid--CoA ligase. (546 aa)    
Predicted Functional Partners:
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.810
paaF
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.808
aroA1
3-phosphoshikimate 1-carboxyvinyltransferase 1; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
 
   
  0.786
acdA_3
Acyl-CoA dehydrogenase.
  
 
  0.785
yngG_2
Hydroxymethylglutaryl-CoA lyase YngG.
 
  0.771
accA1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
 
 
  0.768
CDQ19605.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
  
 0.729
yngHB
Biotin/lipoyl attachment protein.
       0.716
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.671
fabD
Malonyl CoA-acyl carrier protein transacylase.
   
 0.649
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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