Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDQ19515.1 | spoVS | BN982_01810 | BN982_01972 | Putative neutral zinc metallopeptidase. | Stage V sporulation protein S. | 0.464 |
CDQ19671.1 | rny | BN982_01973 | BN982_01974 | Metallophosphoesterase, MG_246/ family. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.715 |
CDQ19671.1 | spoVS | BN982_01973 | BN982_01972 | Metallophosphoesterase, MG_246/ family. | Stage V sporulation protein S. | 0.586 |
miaB | spoVS | BN982_01969 | BN982_01972 | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | Stage V sporulation protein S. | 0.732 |
miaB | tdh | BN982_01969 | BN982_01971 | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.401 |
rny | CDQ19671.1 | BN982_01974 | BN982_01973 | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | Metallophosphoesterase, MG_246/ family. | 0.715 |
rny | spoVS | BN982_01974 | BN982_01972 | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | Stage V sporulation protein S. | 0.490 |
spoVS | CDQ19515.1 | BN982_01972 | BN982_01810 | Stage V sporulation protein S. | Putative neutral zinc metallopeptidase. | 0.464 |
spoVS | CDQ19671.1 | BN982_01972 | BN982_01973 | Stage V sporulation protein S. | Metallophosphoesterase, MG_246/ family. | 0.586 |
spoVS | miaB | BN982_01972 | BN982_01969 | Stage V sporulation protein S. | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.732 |
spoVS | rny | BN982_01972 | BN982_01974 | Stage V sporulation protein S. | Ribonuclease Y; Endoribonuclease that initiates mRNA decay. | 0.490 |
spoVS | tdh | BN982_01972 | BN982_01971 | Stage V sporulation protein S. | L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.411 |
tdh | miaB | BN982_01971 | BN982_01969 | L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.401 |
tdh | spoVS | BN982_01971 | BN982_01972 | L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | Stage V sporulation protein S. | 0.411 |