STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19677.1ACT domain protein. (263 aa)    
Predicted Functional Partners:
CDQ19676.1
Cytoskeletal protein RodZ.
  
    0.953
cinA
Exported protein 10.
  
    0.798
CDQ21290.1
Hypothetical protein.
  
     0.760
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.735
CDQ19678.1
Hypothetical protein.
 
     0.712
sdhC
Succinate dehydrogenase cytochrome b558 subunit.
  
     0.709
mecB
Adapter protein MecA 2; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis; Belongs to the MecA family.
  
     0.658
CDQ18785.1
YwhD family protein.
  
     0.640
sinR_3
HTH-type transcriptional regulator SinR.
  
    0.632
CDQ19629.1
Membrane protein involved in cytochrome C biogenesis.
  
     0.621
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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