Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccSInner membrane protein YccS. (728 aa)    
Predicted Functional Partners:
nifU
NifU-like protein.
   
    0.799
CDQ21259.1
ABC-type antimicrobial peptide transport system, permease component.
 
     0.665
CDQ20421.1
Acetyltransferase (GNAT) family protein.
  
     0.638
CDQ20221.1
Hypothetical protein.
  
     0.563
CDQ20481.1
Hypothetical protein.
  
     0.545
CDQ19864.1
Hypothetical protein.
  
     0.540
CDQ18588.1
Aspartate racemase.
   
    0.537
CDQ21000.1
Hydroxyacylglutathione hydrolase.
  
     0.531
CDQ20533.1
DNA binding domain, excisionase family.
  
 
   0.528
CDQ21360.1
Germination protein, Ger(x)C family.
  
     0.518
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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