Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19830.1Sporulation protein, YlmC/YmxH family. (91 aa)    
Predicted Functional Partners:
sigF_2
Stage II sporulation protein AC; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.908
sigE
Stage II sporulation protein GB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.860
CDQ19437.1
Stage V sporulation protein AC.
  
    0.817
tepA
Translocation-enhancing protein TepA.
 
   
 0.813
CDQ18819.1
Stage II sporulation protein R.
 
     0.802
spoIVA
Stage IV sporulation protein A.
 
     0.783
spoVAD
Stage V sporulation protein AD.
  
    0.775
spoIVB
SpoIVB peptidase precursor.
  
     0.774
CDQ17904.1
Stage III sporulation protein AC.
  
    0.774
CDQ17906.1
Stage III sporulation protein AA.
  
    0.774
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.