Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19867.1Hypothetical protein; Belongs to the UPF0342 family. (147 aa)    
Predicted Functional Partners:
CDQ19666.1
Hypothetical protein; Belongs to the UPF0342 family.
  
 
 
 0.987
CDQ21759.1
Hypothetical protein; PSP1 C-terminal conserved region.
 
   
 0.830
CDQ19882.1
Hypothetical protein; Belongs to the UPF0358 family.
 
     0.800
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.706
CDQ19865.1
Hypothetical protein.
 
    0.698
CDQ19868.1
Hypothetical protein.
       0.694
CDQ18334.1
Hypothetical protein; Belongs to the UPF0354 family.
  
     0.662
CDQ19869.1
Cysteine-rich secretory protein family protein.
 
     0.659
CDQ20375.1
Hypothetical protein.
  
     0.652
yycH
Two-component system YycF/YycG regulatory protein YycH.
  
     0.639
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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