STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ktrA_1Ktr system potassium uptake protein A. (221 aa)    
Predicted Functional Partners:
ktrB_1
Ktr system potassium uptake protein B.
 0.972
ktrB_2
Ktr system potassium uptake protein B.
 0.972
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.647
cinA
Exported protein 10.
    
 0.631
moaE
Molybdopterin synthase catalytic subunit.
   
    0.558
ythB_1
Putative cytochrome bd menaquinol oxidase subunit II.
  
    0.504
ythA_1
Putative cytochrome bd menaquinol oxidase subunit I.
  
    0.499
CDQ18189.1
uroporphyrinogen-III synthase.
  
    0.436
CDQ19785.1
uroporphyrinogen-III synthase.
  
    0.436
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.