Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cheVChemotaxis protein CheV. (301 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein CheA.
 0.999
cheB
Chemotaxis response regulator protein-glutamate methylesterase.
 
 0.999
fliN
Flagellar motor switch protein FliN.
 
 0.999
hemAT
Heme-based aerotactic transducer HemAT.
 
 0.997
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
  
 0.996
mcpC
Methyl-accepting chemotaxis protein McpC.
 
 0.996
cheR
Chemotaxis protein methyltransferase.
 
 
 0.994
mcpA
Hypothetical protein; H1.
 
 0.994
pfyP_1
Hypothetical protein; Phototropin homolog.
 
 0.994
kinA_1
Sporulation kinase A.
  
 0.993
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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