STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19948.1Hypothetical protein. (74 aa)    
Predicted Functional Partners:
CDQ19947.1
Hypothetical protein.
 
     0.892
CDQ21107.1
Gas vesicle protein.
  
     0.646
CDQ19946.1
YvrJ protein family protein.
       0.612
CDQ19261.1
Tetratricopeptide repeat protein.
  
     0.574
yhcN
Lipoprotein YhcN precursor.
  
     0.568
CDQ18004.1
YceG-like family protein.
  
     0.514
CDQ20085.1
Putative membrane protein.
  
     0.478
CDQ18386.1
Hypothetical protein.
  
     0.470
cssS
Sensor histidine kinase CssS.
  
     0.461
CDQ20476.1
Flagellin N-methylase.
  
     0.453
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.