Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykfBL-Ala-D/L-Glu epimerase. (365 aa)    
Predicted Functional Partners:
ykfC
Gamma-D-glutamyl-L-lysine endopeptidase.
 
  
 0.910
ykfA_1
Putative murein peptide carboxypeptidase.
 
    0.854
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase.
    
 0.701
menB
1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).
    
 0.684
oppF_2
Stage 0 sporulation protein KE.
  
    0.678
CDQ19083.1
2-keto-3-deoxy-galactonokinase.
 
 
 0.649
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.645
dppA
D-aminopeptidase.
 
    0.640
mhqA_2
Putative ring-cleaving dioxygenase MhqA.
     
 0.632
CDQ21382.1
Long-chain-fatty-acid--CoA ligase FadD13.
 
 
  0.572
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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