STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgR_4Transcriptional regulator KdgR. (252 aa)    
Predicted Functional Partners:
kipI
Sporulation inhibitor KipI.
  
    0.711
kipA
KipI antagonist.
  
    0.659
CDQ20025.1
Collagenase.
 
     0.583
hutH
Histidine ammonia-lyase.
    
 0.568
CDQ17825.1
Hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.546
hutI
Imidazolonepropionase.
    
  0.466
CDQ20387.1
Imidazolonepropionase.
    
  0.466
mhqA_2
Putative ring-cleaving dioxygenase MhqA.
  
 
  0.439
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.428
CDQ20491.1
Manganese transport protein MntH.
  
    0.426
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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