STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykoDPutative HMP/thiamine import ATP-binding protein YkoD. (492 aa)    
Predicted Functional Partners:
ykoC
Putative HMP/thiamine permease protein YkoC.
 0.998
ykoE
Putative HMP/thiamine permease protein YkoE.
 
  
 0.979
ecfT
Energy-coupling factor transporter transmembrane protein EcfT; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.946
CDQ21259.1
ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.944
oppD_1
Stage 0 sporulation protein KD.
  
 
0.707
oppF_2
Stage 0 sporulation protein KE.
  
 
0.707
oppD_2
Stage 0 sporulation protein KD.
  
 
0.707
oppD_3
Stage 0 sporulation protein KD; Belongs to the ABC transporter superfamily.
  
 
0.707
gsiC
Glutathione transport system permease protein GsiC.
  
 
 0.650
dppB
Dipeptide transport system permease protein DppB.
  
 
 0.650
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.