STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
speG_2Spermidine N(1)-acetyltransferase. (115 aa)    
Predicted Functional Partners:
ydaF_4
Putative ribosomal N-acetyltransferase YdaF.
  
     0.770
aacA-aphD
Bifunctional AAC/APH.
  
     0.762
speG_1
Spermidine N(1)-acetyltransferase.
  
     0.757
gltB_1
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.651
speG_4
Spermidine N(1)-acetyltransferase.
  
     0.621
ydaF_3
Putative ribosomal N-acetyltransferase YdaF.
  
     0.581
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.572
CDQ20091.1
Hypothetical protein.
       0.529
aroK
Shikimate kinase.
    
  0.517
aroF_1
Phospho-2-dehydro-3-deoxyheptonate aldolase.
    
  0.505
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.