STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20096.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
CDQ20095.1
Conjugal transfer protein TrbA.
 
    0.958
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.670
hom_2
Homoserine dehydrogenase.
     
  0.544
katA_1
Catalase; Belongs to the catalase family.
  
   0.515
thiL
Thiamine-monophosphate kinase.
     
  0.490
iucB
N(6)-hydroxylysine O-acetyltransferase.
  
 
  0.451
phaJ
(R)-specific enoyl-CoA hydratase.
  
  0.430
CDQ19030.1
Hypothetical protein.
  
  0.430
CDQ19031.1
(3R)-hydroxyacyl-ACP dehydratase subunit HadB.
  
  0.430
CDQ21444.1
Hypothetical protein.
  
     0.422
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.