STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20096.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
CDQ20095.1
Conjugal transfer protein TrbA.
 
    0.936
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.739
katA_1
Catalase; Belongs to the catalase family.
  
   0.511
iucB
N(6)-hydroxylysine O-acetyltransferase.
  
 
  0.454
ppsC
Beta-ketoacyl-acyl-carrier-protein synthase I.
 
  0.446
phaJ
(R)-specific enoyl-CoA hydratase.
  
  0.445
CDQ19030.1
Hypothetical protein.
  
  0.445
CDQ19031.1
(3R)-hydroxyacyl-ACP dehydratase subunit HadB.
  
  0.445
CDQ21444.1
Hypothetical protein.
  
     0.422
CDQ21316.1
YugN-like family protein.
  
     0.418
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.