STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kce3-keto-5-aminohexanoate cleavage enzyme. (296 aa)    
Predicted Functional Partners:
lcdH_1
L-carnitine dehydrogenase.
 
  
  0.974
lcdH_2
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
    0.954
kynB
Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
    0.736
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
    
 0.671
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
    
  0.634
CDQ20116.1
Transcriptional regulator BetI.
 
     0.602
CDQ18723.1
Putative acyl-CoA thioester hydrolase.
    
  0.576
CDQ18971.1
Putative acyl-CoA thioester hydrolase.
    
  0.576
fadM_2
Long-chain acyl-CoA thioesterase FadM.
    
  0.533
ybgC
Acyl-CoA thioester hydrolase YbgC.
    
  0.533
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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