STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CDQ20115.14-carboxymuconolactone decarboxylase. (135 aa)    
Predicted Functional Partners:
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.868
betL_2
Glycine betaine-Na(+) symporter; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.723
mutB
Methylmalonyl-CoA mutase large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.679
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.614
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
 
 0.610
kce
3-keto-5-aminohexanoate cleavage enzyme.
    
  0.595
CDQ19352.1
Acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase.
 
  
  0.565
dapH_2
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
    
  0.538
CDQ19130.1
Tripartite tricarboxylate transporter family receptor.
   
 
  0.527
aroB
3-dehydroquinate synthase.
     
  0.523
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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