STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iolA_1Methylmalonate semialdehyde dehydrogenase [acylating]. (486 aa)    
Predicted Functional Partners:
fadM_3
Proline dehydrogenase 1.
 
 
  0.884
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.817
adhB
Alcohol dehydrogenase 2.
  
  0.811
ptsG_1
EIICBA-Glc.
   
 
 0.743
yhfP
Putative quinone oxidoreductase YhfP.
    
  0.713
CDQ20122.1
Putative transporter.
  
    0.702
CDQ20443.1
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.695
citZ
Citrate synthase 2; Belongs to the citrate synthase family.
   
 0.682
acsA_1
Acetyl-coenzyme A synthetase.
   
  0.677
acs
Acetyl-coenzyme A synthetase.
   
  0.677
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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