STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
adhBAlcohol dehydrogenase 2. (395 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.826
iolA_1
Methylmalonate semialdehyde dehydrogenase [acylating].
  
  0.811
CDQ20122.1
Putative transporter.
       0.773
yhdG_1
Putative amino acid permease YhdG.
 
   0.663
yhdG_2
Putative amino acid permease YhdG.
 
   0.663
bdhA_3
NADH-dependent butanol dehydrogenase A.
  
  
0.639
deoC2
Deoxyribose-phosphate aldolase 2; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 
  0.616
cat1
Succinyl-CoA:coenzyme A transferase.
  
 
 0.614
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.593
gldA
Glycerol dehydrogenase.
     
 0.583
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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