STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
araDL-ribulose-5-phosphate 4-epimerase. (230 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 
 0.998
araA
L-arabinose isomerase.
 
 0.994
egsA
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
  
 
 0.877
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
    
 0.856
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.853
xylB_3
Xylulose kinase.
 
 0.832
araR
Arabinose metabolism transcriptional repressor.
 
  
 0.822
xylB_1
Xylulose kinase; Belongs to the FGGY kinase family.
  
 
 0.776
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
  
 
 0.776
xylB_4
Xylulose kinase.
  
 
 0.776
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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