STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araDL-ribulose-5-phosphate 4-epimerase. (230 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase.
 
 0.991
araB
Ribulokinase.
 
 
 0.984
mhqA_2
Putative ring-cleaving dioxygenase MhqA.
  
 
 0.793
xylB_3
Xylulose kinase.
 
 0.791
araR
Arabinose metabolism transcriptional repressor.
 
  
 0.776
egsA
Glycerol-1-phosphate dehydrogenase [NAD(P)+].
  
  
 0.759
punA
Purine nucleoside phosphorylase 1; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
 
 0.723
xylB_1
Xylulose kinase; Belongs to the FGGY kinase family.
  
 
 0.721
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
 
 
 0.721
xylB_4
Xylulose kinase.
 
 
 0.721
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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