CDQ20141.1 protein (Halobacillus dabanensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CDQ20141.1

Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor. (384 aa)

Predicted Functional Partners:

abnA

0.931

araA

0.914

abf2

0.810

abfA

0.794

CDQ20126.1

0.698

araD

0.653

araR

0.602

narT

0.595

xylA

0.552

xynB_1

0.507

Your Current Organism:

Halobacillus dabanensis

NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDQ20126.1	CDQ20141.1	BN982_02443	BN982_02458	Hypothetical protein.	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	0.698
CDQ20126.1	abf2	BN982_02443	BN982_02448	Hypothetical protein.	Intracellular exo-alpha-L-arabinofuranosidase 2.	0.876
CDQ20126.1	abfA	BN982_02443	BN982_02452	Hypothetical protein.	Intracellular exo-alpha-(1->5)-L-arabinofuranosidase.	0.827
CDQ20126.1	abnA	BN982_02443	BN982_02457	Hypothetical protein.	Extracellular endo-alpha-(1->5)-L-arabinanase 1 precursor.	0.660
CDQ20126.1	araA	BN982_02443	BN982_02454	Hypothetical protein.	L-arabinose isomerase.	0.559
CDQ20141.1	CDQ20126.1	BN982_02458	BN982_02443	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Hypothetical protein.	0.698
CDQ20141.1	abf2	BN982_02458	BN982_02448	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Intracellular exo-alpha-L-arabinofuranosidase 2.	0.810
CDQ20141.1	abfA	BN982_02458	BN982_02452	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Intracellular exo-alpha-(1->5)-L-arabinofuranosidase.	0.794
CDQ20141.1	abnA	BN982_02458	BN982_02457	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Extracellular endo-alpha-(1->5)-L-arabinanase 1 precursor.	0.931
CDQ20141.1	araA	BN982_02458	BN982_02454	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	L-arabinose isomerase.	0.914
CDQ20141.1	araD	BN982_02458	BN982_02456	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	L-ribulose-5-phosphate 4-epimerase.	0.653
CDQ20141.1	araR	BN982_02458	BN982_02459	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Arabinose metabolism transcriptional repressor.	0.602
CDQ20141.1	narT	BN982_02458	BN982_03116	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Putative nitrate transporter NarT.	0.595
CDQ20141.1	xylA	BN982_02458	BN982_01399	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Xylose isomerase; Belongs to the xylose isomerase family.	0.552
CDQ20141.1	xynB_1	BN982_02458	BN982_01391	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.	0.507
abf2	CDQ20126.1	BN982_02448	BN982_02443	Intracellular exo-alpha-L-arabinofuranosidase 2.	Hypothetical protein.	0.876
abf2	CDQ20141.1	BN982_02448	BN982_02458	Intracellular exo-alpha-L-arabinofuranosidase 2.	Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.	0.810
abf2	abfA	BN982_02448	BN982_02452	Intracellular exo-alpha-L-arabinofuranosidase 2.	Intracellular exo-alpha-(1->5)-L-arabinofuranosidase.	0.899
abf2	abnA	BN982_02448	BN982_02457	Intracellular exo-alpha-L-arabinofuranosidase 2.	Extracellular endo-alpha-(1->5)-L-arabinanase 1 precursor.	0.859
abf2	araA	BN982_02448	BN982_02454	Intracellular exo-alpha-L-arabinofuranosidase 2.	L-arabinose isomerase.	0.944