STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20161.1DinB superfamily protein. (152 aa)    
Predicted Functional Partners:
yhcN
Lipoprotein YhcN precursor.
  
     0.594
CDQ20281.1
Hypothetical protein.
  
     0.563
CDQ21598.1
Hypothetical protein.
  
     0.505
CDQ19235.1
Hypothetical protein.
  
    0.495
rihA_2
Pyrimidine-specific ribonucleoside hydrolase RihA.
       0.493
CDQ19770.1
Hypothetical protein.
  
     0.491
CDQ21474.1
Bacillithiol system oxidoreductase, YphP/YqiW family; Belongs to the UPF0403 family.
  
     0.455
CDQ19306.1
Small, acid-soluble spore proteins, alpha/beta type.
 
     0.434
CDQ19197.1
Lysine transporter.
  
     0.420
pheA
Prephenate dehydratase.
     
  0.408
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.