STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsC_1Ribose transport system permease protein RbsC. (318 aa)    
Predicted Functional Partners:
rbsB_1
D-ribose-binding periplasmic protein precursor.
 0.999
rbsA
Ribose import ATP-binding protein RbsA.
 0.999
mglA_2
Galactose/methyl galactoside import ATP-binding protein MglA.
 0.998
rbsD
D-ribose pyranase.
 
 
 0.996
alsB
D-allose-binding periplasmic protein precursor.
 
 0.990
rbsK
Ribokinase.
 
  
 0.984
rbsB_2
D-ribose-binding periplasmic protein precursor.
 
 0.959
ccpA_6
Glucose-resistance amylase regulator.
  
 0.935
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
 
     0.880
cysA_1
Sulfate/thiosulfate import ATP-binding protein CysA.
 
 0.875
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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