Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
citS_2Citrate transporter. (442 aa)    
Predicted Functional Partners:
dcuS_2
Sensor histidine kinase DcuS.
 
  
 0.834
maeB_2
NADP-dependent malic enzyme.
  
  
 0.833
dcuR_2
Transcriptional regulatory protein DcuR.
 
  
 0.800
maeB_1
NADP-dependent malic enzyme.
  
  
 0.546
CDQ19077.1
Hypothetical protein.
  
     0.508
citS_1
Sensor protein CitS.
 
  
 0.473
dcuS_1
Sensor histidine kinase DcuS.
 
  
 0.427
dcuR_1
Transcriptional regulatory protein DcuR.
 
  
 0.415
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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