Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bioIBiotin biosynthesis cytochrome P450. (418 aa)    
Predicted Functional Partners:
pcpB
Pentachlorophenol 4-monooxygenase.
  
 0.800
polA_2
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
    
 0.647
rutR
Rut operon repressor.
 
     0.605
CDQ19507.1
Tetratricopeptide repeat protein.
   
  0.579
CDQ18204.1
Na(+)-translocating NADH-quinone reductase subunit F.
  
 0.557
bioF
8-amino-7-oxononanoate synthase 2.
  
 
 0.554
CDQ19668.1
8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
  
 
 0.554
cpnA_3
Cyclopentanol dehydrogenase.
  
  0.551
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.542
sqhC
Sporulenol synthase.
    
 0.502
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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