STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpnA_3Cyclopentanol dehydrogenase. (253 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
     
 0.795
ptsG_1
EIICBA-Glc.
     
 0.718
pfyP_2
Hypothetical protein; Phototropin homolog.
     
  0.615
pfyP_3
Hypothetical protein; Phototropin homolog.
     
  0.615
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
   
 0.605
rutR
Rut operon repressor.
       0.598
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.587
fruA_1
EIIABC-Fru.
   
 0.569
bioI
Biotin biosynthesis cytochrome P450.
  
  0.551
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
 0.541
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.