Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
arnCUndecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase. (315 aa)    
Predicted Functional Partners:
CDQ20247.1
Hypothetical protein.
 
 
 0.937
arnF
Undecaprenyl phosphate-aminoarabinose flippase subunit ArnF.
 
  
 0.889
arnB_1
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase.
  
 0.887
rfbB
dTDP-glucose 4,6-dehydratase.
 
  
 0.838
rmlA
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.834
CDQ20250.1
Hypothetical protein.
       0.783
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
 
 0.735
CDQ18913.1
GtrA-like protein.
 
 
 0.642
CDQ18912.1
Putative integral membrane protein.
  
 
 0.581
icaA
Poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
 0.528
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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