Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20324.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
CDQ20323.1
Hypothetical protein.
       0.741
CDQ20322.1
Hypothetical protein.
       0.716
CDQ20321.1
Type IV secretion system protein VirD4.
       0.696
CDQ20320.1
Hypothetical protein.
       0.592
CDQ20325.1
Hypothetical protein.
       0.584
CDQ20315.1
Hypothetical protein.
       0.511
CDQ20316.1
Conjugal transfer ATP-binding protein TraC.
       0.511
CDQ20317.1
Hypothetical protein.
       0.511
CDQ20318.1
Hypothetical protein.
       0.511
CDQ20319.1
Hypothetical protein.
       0.511
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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