STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CDQ20337.1Cytidine deaminase. (139 aa)    
Predicted Functional Partners:
pdp
Pyrimidine-nucleoside phosphorylase.
  
 
 0.773
udk
Uridine kinase.
    
 0.731
cpdB
2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor.
    
  0.717
yhcR
Endonuclease YhcR precursor; Belongs to the 5'-nucleotidase family.
    
  0.717
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
     
  0.708
dgk
Deoxyguanosine kinase.
     
  0.663
tdk_1
Thymidine kinase.
    
 0.645
tdk_2
Thymidine kinase.
    
 0.645
CDQ20512.1
Uridine kinase.
    
 0.628
dck
Deoxyadenosine/deoxycytidine kinase.
     
  0.615
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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