STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20433.1Bacterial Ig-like domain (group 1). (248 aa)    
Predicted Functional Partners:
ccsB
Cytochrome c biogenesis protein CcsB.
  
    0.778
CDQ21600.1
Hypothetical protein.
  
     0.766
CDQ19871.1
YugN-like family protein.
  
     0.758
CDQ21302.1
Hypothetical protein.
  
     0.750
CDQ19491.1
Hypothetical protein.
  
     0.749
cccA_1
Cytochrome c551.
 
    0.748
CDQ20361.1
Hypothetical protein.
  
     0.745
CDQ19875.1
Cytochrome c oxidase assembly factor CtaG.
 
     0.743
CDQ17989.1
Hypothetical protein.
  
     0.741
petB
Cytochrome b.
  
     0.735
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.