STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20499.1acyl-CoA thioester hydrolase, YbgC/YbaW family. (132 aa)    
Predicted Functional Partners:
mmgB_4
Putative 3-hydroxybutyryl-CoA dehydrogenase.
  
 
  0.864
CDQ20498.1
Putative aminoglycoside phosphotransferase.
       0.764
comB
Putative 2-phosphosulfolactate phosphatase.
       0.762
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.684
paaG_1
1,2-epoxyphenylacetyl-CoA isomerase.
  
 
  0.587
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.574
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.555
kce
3-keto-5-aminohexanoate cleavage enzyme.
    
 0.507
kduD_3
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
    
  0.506
mmgB_1
Putative 3-hydroxybutyryl-CoA dehydrogenase.
  
 
  0.475
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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