Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cmpDBicarbonate transport ATP-binding protein CmpD. (257 aa)    
Predicted Functional Partners:
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
 0.997
ssuA_2
Putative aliphatic sulfonates-binding protein precursor.
 
 0.994
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
 0.986
ssuA_1
Putative aliphatic sulfonates-binding protein precursor.
 
 0.977
modB
Molybdenum transport system permease protein ModB.
   
 0.936
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
   
 
0.909
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
 
  
 
0.907
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
    
0.849
phnK
Putative phosphonates utilization ATP-binding protein PhnK.
 
  
 
0.835
ecsA_2
ABC-type transporter ATP-binding protein EcsA.
 
  
 
0.818
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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