STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20652.1Capsule polysaccharide biosynthesis protein. (472 aa)    
Predicted Functional Partners:
CDQ20653.1
Capsule polysaccharide biosynthesis protein.
      
0.773
secF
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
     
  0.671
CDQ20651.1
Hypothetical protein.
    
  0.541
flgK
Flagellar hook-associated protein 1.
  
    0.539
rmlA
Glucose-1-phosphate thymidylyltransferase.
  
    0.492
pseI
Pseudaminic acid synthase.
  
  
 0.487
mhqA_3
Putative ring-cleaving dioxygenase MhqA.
       0.484
CDQ20650.1
Capsule polysaccharide biosynthesis protein.
      
0.471
dpaA
Dipicolinate synthase subunit A.
   
    0.470
CDQ20647.1
UDP-glucose 4-epimerase.
  
    0.453
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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