Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20677.1X-X-X-Leu-X-X-Gly heptad repeats. (608 aa)    
Predicted Functional Partners:
ydfJ
Membrane protein YdfJ.
   
 0.975
CDQ20679.1
DNA-binding transcriptional repressor AcrR.
 
  
 0.899
CDQ20085.1
Putative membrane protein.
  
     0.613
CDQ20360.1
Hypothetical protein.
  
     0.503
CDQ18688.1
Hypothetical protein.
  
     0.467
CDQ20676.1
Hypothetical protein.
       0.444
CDQ18690.1
Putative membrane protein.
  
     0.443
CDQ18306.1
EcsC protein family protein.
  
    0.414
gltB_1
Ferredoxin-dependent glutamate synthase 1.
       0.411
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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