STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatC_2PTS system galactitol-specific EIIC component. (419 aa)    
Predicted Functional Partners:
fruA_2
EIIABC-Fru.
 
 
 0.991
gatB_2
Galactitol-specific phosphotransferase enzyme IIB component.
 
 0.990
gatB_3
Galactitol-specific phosphotransferase enzyme IIB component.
 
 0.989
licR
Putative licABCH operon regulator.
 
 
 0.968
gatD
Galactitol-1-phosphate 5-dehydrogenase.
 
  0.963
CDQ20686.1
D-arabitol-phosphate dehydrogenase.
 
  0.959
mtlR_1
Mannitol operon transcriptional activator.
 
 
 0.918
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.832
ptsH_1
Phosphocarrier protein HPr.
    
  0.797
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
 
 0.797
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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