STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yumC_1Ferredoxin--NADP reductase 2. (335 aa)    
Predicted Functional Partners:
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
  0.787
srpC_3
Putative chromate transport protein.
       0.773
chrA1
Chromate transport protein.
       0.773
gbsA_2
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.762
CDQ20698.1
3-phenylpropionate dioxygenase ferredoxin subunit.
  
 
  0.741
CDQ20699.1
Putative metal-dependent hydrolase of the TIM-barrel fold protein.
       0.712
trxA_1
Thioredoxin; Belongs to the thioredoxin family.
 
 0.691
ahpC
Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.601
CDQ18204.1
Na(+)-translocating NADH-quinone reductase subunit F.
   
  0.528
CDQ19261.1
Tetratricopeptide repeat protein.
  
  0.507
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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