STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
liaR_3Transcriptional regulatory protein LiaR. (211 aa)    
Predicted Functional Partners:
liaS_3
Sensor histidine kinase LiaS.
 
 0.985
liaS_2
Sensor histidine kinase LiaS.
 
 0.968
desK
Sensor histidine kinase DesK.
 
 0.932
liaS_1
Sensor histidine kinase LiaS.
 0.913
degS
Signal transduction histidine-protein kinase/phosphatase DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
 
 0.905
comP
Sensor histidine kinase ComP.
 
 0.861
cheV
Chemotaxis protein CheV.
   
 0.800
fliN
Flagellar motor switch protein FliN.
  
 
 0.713
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.695
gerE
Spore germination protein GerE.
  
     0.666
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.