STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaR_3Transcriptional regulatory protein LiaR. (211 aa)    
Predicted Functional Partners:
liaS_3
Sensor histidine kinase LiaS.
 
 0.980
liaS_2
Sensor histidine kinase LiaS.
 
 0.972
desK
Sensor histidine kinase DesK.
 
 0.909
liaS_1
Sensor histidine kinase LiaS.
  0.904
degS
Signal transduction histidine-protein kinase/phosphatase DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
  0.896
comP
Sensor histidine kinase ComP.
 
  0.847
cheV
Chemotaxis protein CheV.
   
 0.845
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.780
kinA_1
Sporulation kinase A.
 
 
 0.749
fliN
Flagellar motor switch protein FliN.
  
 
  0.731
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.