STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolA_2Methylmalonate semialdehyde dehydrogenase [acylating]; Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively. (485 aa)    
Predicted Functional Partners:
garR
2-hydroxy-3-oxopropionate reductase.
 
  0.914
gltB_1
Ferredoxin-dependent glutamate synthase 1.
  
 
 0.849
echA8_3
Putative enoyl-CoA hydratase echA8.
  0.810
acsA_1
Acetyl-coenzyme A synthetase.
   
  0.809
acs
Acetyl-coenzyme A synthetase.
   
  0.809
acsA_2
Acetyl-coenzyme A synthetase.
   
  0.809
ptsG_1
EIICBA-Glc.
 
 
 
 0.794
gabT
4-aminobutyrate aminotransferase GabT; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  0.780
fadB_2
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  0.778
CDQ20443.1
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.776
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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