Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDQ20726.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
ydbD_3
Putative manganese catalase.
 
     0.608
CDQ20187.1
Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG).
  
     0.568
gbsI
Hypothetical protein; Belongs to the GbsR family.
  
     0.560
gsiB_2
General stress protein B.
 
     0.540
CDQ21420.1
Hypothetical protein.
  
     0.538
cvfC_2
Hypothetical protein; Conserved virulence factor C.
  
     0.506
CDQ21031.1
Hypothetical protein.
  
     0.502
CDQ18363.1
Hypothetical protein.
  
     0.472
sspH
Small, acid-soluble spore protein H.
  
     0.469
CDQ19509.1
Hypothetical protein.
  
     0.449
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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